TRANSCRIPTION TARGET GENE SET ENRICHMENT RESULTS

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

This table lists the enriched transcription factor targets (TFT), number of Entrez IDs in your user data set for the TFT, the corresponding Entrez IDs, and the statistics for the enriched TF.
The statistic column lists:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, the number of user gene ids is linked to a table with information about the user ids, and the Entrez IDs are linked to Entrez Gene.

TFT	#Gene	EntrezGene	Statistics
hsa_SCGGAAGY_V$ELK1_02	5	23417 1376 8800 79172 788	C=1176;O=5;E=0.76;R=6.55;rawP=0.0009;adjP=0.0140
hsa_V$MEF2_03	3	5509 284723 5256	C=235;O=3;E=0.15;R=19.66;rawP=0.0005;adjP=0.0140
hsa_V$TGIF_01	2	5509 10243	C=243;O=2;E=0.16;R=12.68;rawP=0.0109;adjP=0.0256
hsa_V$CEBPB_01	2	5509 10449	C=258;O=2;E=0.17;R=11.94;rawP=0.0122;adjP=0.0256
hsa_GGGCGGR_V$SP1_Q6	6	5509 65084 10243 1374 1376 788	C=2891;O=6;E=1.88;R=3.20;rawP=0.0095;adjP=0.0256
hsa_V$MAX_01	2	5164 1374	C=258;O=2;E=0.17;R=11.94;rawP=0.0122;adjP=0.0256
hsa_V$PPAR_DR1_Q2	2	284723 3158	C=257;O=2;E=0.17;R=11.99;rawP=0.0121;adjP=0.0256
hsa_V$T3R_Q6	2	5164 65084	C=248;O=2;E=0.16;R=12.42;rawP=0.0113;adjP=0.0256
hsa_V$TEF1_Q6	2	1374 343099	C=222;O=2;E=0.14;R=13.88;rawP=0.0091;adjP=0.0256
hsa_V$NFY_Q6_01	2	23417 5164	C=261;O=2;E=0.17;R=11.80;rawP=0.0124;adjP=0.0256

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).